PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0684s00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 1072aa    MW: 119192 Da    PI: 9.2584
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0684s00050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.34.8e-199791059186
          trihelix    1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86  
                        +W  +ev++Li +r+e+++r++  k +++lWee+s+k+ + g++rsp qCk+ w +l  +y+ ik+ + ++     +++py +++e
  Vang0684s00050.1  979 KWRTDEVKKLIGMREELHDRFQVVKGRMALWEEISQKLLADGISRSPGQCKSLWTSLVLKYEGIKNEKDSK-----KSWPYIEDME 1059
                        7****************************************************************999984.....56*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.104.7E-6073249IPR001279Metallo-beta-lactamase
SuperFamilySSF562814.17E-6474246IPR001279Metallo-beta-lactamase
SMARTSM008493.9E-2086289IPR001279Metallo-beta-lactamase
PfamPF007533.6E-987231IPR001279Metallo-beta-lactamase
SuperFamilySSF562814.17E-64301522IPR001279Metallo-beta-lactamase
Gene3DG3DSA:3.60.15.104.7E-60301369IPR001279Metallo-beta-lactamase
PfamPF075211.2E-6475506IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500908.2359721036IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.1E-49731036IPR009057Homeodomain-like
PfamPF138371.7E-159771061No hitNo description
CDDcd122035.61E-189781043No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1072 aa     Download sequence    Send to blast
MAALTSLSLS LRPLSLRRTT TSATLSSLPG RTHGSTTKAP RRRARRIEGP RKSMEDSVQR  60
KMEQFYEGSD GPPLRVLPIG GLGEIGMNCM LVGNHDRYIL IDAGVMFPDY DELGVQKIIP  120
DTTFIRKWSH KIEALVITHG HEDHIGALPW VIPALDSNTP IFSSSFTKEL INKRLKEHGI  180
FVPSRLKVFR MRKKFVAGPF EIEPIRVTHS IPDCCGLVLR CSDGTILHTG DWKIDETPLD  240
GNVFDREALE ELSKEGVTLV YTYNYGLWCS LSSALYIKLN MAFMASPGLK GEHVSTFKIS  300
NCIPLMMSDS TNVLSPGRTI SESVVADALL RHISTSNGRV ITTQFASNLH RLGSVKAAAD  360
LTGRKLVFVG MSLRTYLDAA WKDGKAPIDP STLVKAEDID AYAPKDLLIV TTGSQAEPRA  420
ALNLASYGSS HAFKLTKEDL VLYSAKVIPG NESRVMKMLN RISDIGSTIV MGKNEGLHTS  480
GHAYRGELEE VLRIVKPQHF LPIHGELLFL KEHELLGKST GIRHTAVSHL LLTKVILSIS  540
QKWTSVLLVD EQLITLALWT QVRSVDARPA KRTPSLDARP AKRTPNQAEE DARPTKRTPS  600
QAEEDARXAK RTPSQXEEDA RPAKRTPSQX EEDARPAKRT PSQXEEDARP AKRTPTSWPK  660
LEDKAKCRVK GECLRKLVEM TAKLTEEKLS KERNTHGMDG PLSLSTKFDE NFDPLLKYSD  720
GDRAFGTSSE LFIDERLRIA LDGIIVTSME IFRPKILGSL APNTLKGKIR ITTRCLWLDK  780
GKLMDALYKS AHAALSSCPV NSPLAHIERT VSEVLRKMVR KYSGKRPEVI AIAIENPAST  840
ITDEINTKLS GKTHAGLGIS TAKRAVDRHE KGNQPTSLQI TDDSIHNASG PEDYLSDEDN  900
TASGAEGDLS ELEDSDEFWK PFIAPLPVEK PLGANNAYDS QKEHESNRKK DDSKIIDKAK  960
SEEISTSEPK SSKSVKRNKW RTDEVKKLIG MREELHDRFQ VVKGRMALWE EISQKLLADG  1020
ISRSPGQCKS LWTSLVLKYE GIKNEKDSKK SWPYIEDMER IMSDKEAPAT K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a0v_B2e-747452419419RIBONUCLEASE J
5a0v_A2e-747452419419RIBONUCLEASE J
5a0t_B2e-747452419419RIBONUCLEASE J
5a0t_A2e-747452419419RIBONUCLEASE J
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490031.10.0PREDICTED: ribonuclease J-like
TrEMBLV7AWH30.0V7AWH3_PHAVU; Uncharacterized protein
STRINGGLYMA04G37020.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50993450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein